alt.freeweights.vision / biomedical-ner-all-ONNX

From:

onnx-community <huggingface.co/onnx-community>Newsgroups: alt.freeweights.visionSubject:

biomedical-ner-all-ONNX

Date: 2026-11-15Commit: 6ceb893Signed: 2DC28CC7B26A283B ✓

Token classification model. Onnx weights, 915 MB in all. Published by onnx-community under Apache-2.0.

vision

915MBbiomedical-ner-all-ONNXonnxpermissive

FactsParamsnot statedSize915 MBFormatsonnxTasktoken classificationLicenseApache-2.0From sourcepermissive

$ fw get onnx-community/biomedical-ner-all-ONNX
# manifest sha256 014bebd2e87e… · 915 MB · 16 files
$ fw verify ./biomedical-ner-all-ONNX onnx-community/biomedical-ner-all-ONNX

From sourceHosted (signed)onnx-community/biomedical-ner-all-ONNXLast check: 2026-11-15 05:24 UTC

Run at home Get help

Get help: custom fine-tune or private deploy. We review your setup before we quote.

Quantized of biomedical-ner-all.

Works with

Run2 Convert3 Scan1

Runs with

Ranked by fit to this model (onnx), then by GitHub stars.

Ultralytics OpenVINO

Convert with

ONNX

Optimum

Olive

Scan with

ModelScan

Overview Model card Files Use it License Provenance Model tree

Overview

Size: 915 MB
Weights: 67.0 MB (smallest of 8 ONNX variants)
Parameters: not stated
Formats: onnx
Task: token classification
License: Apache-2.0 (permissive)
Files: 16, each with a sha256
Publisher: onnx-community
Added: 2026-11-15
Section: alt.freeweights.vision

Lineage

Original release from the publisher.

Base model: d4data/biomedical-ner-all

Where these bytes come from

Publisher at the pinned commit→You

Sources are tried in order. A file counts only when its size and sha256 match the manifest. Sources are checked when you ask for them, not on a timer.

Sources

Badge	Host	Last check	Result
From source	huggingface.co	2026-11-15 05:24 UTC	passed

Model card

From the publisher at commit 6ceb893. Shown as plain text with links; images open at the publisher.

biomedical-ner-all (ONNX)#

This is an ONNX version of d4data/biomedical-ner-all. It was automatically converted and uploaded using this Hugging Face Space.

Usage with Transformers.js#

See the pipeline documentation for token-classification: https://huggingface.co/docs/transformers.js/api/pipelines#module_pipelines.TokenClassificationPipeline

About the Model#

An English Named Entity Recognition model, trained on Maccrobat to recognize the bio-medical entities (107 entities) from a given text corpus (case reports etc.). This model was built on top of distilbert-base-uncased

Dataset: Maccrobat https://figshare.com/articles/dataset/MACCROBAT2018/9764942
Carbon emission: 0.0279399890043426 Kg
Training time: 30.16527 minutes
GPU used : 1 x GeForce RTX 3060 Laptop GPU

Checkout the tutorial video for explanation of this model and corresponding python library: https://youtu.be/xpiDPdBpS18

Usage#

The easiest way is to load the inference api from huggingface and second method is through the pipeline object offered by transformers library.

from transformers import pipeline
from transformers import AutoTokenizer, AutoModelForTokenClassification

tokenizer = AutoTokenizer.from_pretrained("d4data/biomedical-ner-all")
model = AutoModelForTokenClassification.from_pretrained("d4data/biomedical-ner-all")

pipe = pipeline("ner", model=model, tokenizer=tokenizer, aggregation_strategy="simple") # pass device=0 if using gpu
pipe("""The patient reported no recurrence of palpitations at follow-up 6 months after the ablation.""")

Author#

This model is part of the Research topic "AI in Biomedical field" conducted by Deepak John Reji, Shaina Raza. If you use this work (code, model or dataset), please star at:

https://github.com/dreji18/Bio-Epidemiology-NER

You can support me here :)#

Buy Me A Coffee

Files

16 files · 915 MBWeights 67.0 MB (smallest of 8 ONNX variants). Sizes and sha256 from the signed manifest.

Hide all 16 files with their sha256

File	Size	sha256
.gitattributes	1.52 KB	11ad7efa24975ee4b0c3c3a38ed18737f0658a5f75a0a96787b576a78a023361
README.md	3.71 KB	5c37c9d7bba98d014c8ccccd3aa4bfd4f287ccd4e8ef8d51a22049f7147ea82e
config.json	5.04 KB	191ba33957599d992b60aa06844d5a4045b29fbb340b96e5b258019b57caf200
onnx/model.onnx	266 MB	a9314804ce03e4c1815044c98120bbd6c24e12e46689fb3c3ff72348521c4998
onnx/model_bnb4.onnx	120 MB	13b3d38c2b3c881242513c06852cefafc4618c07dca0b82a79bedf38677b651d
onnx/model_fp16.onnx	133 MB	a68957c8d140f5fc369f5a9f9ec961fd2bb7d16e0f3050671c6ba701771dad00
onnx/model_int8.onnx	67.0 MB	7f7fbaf4db27c9283fc32a26ad79028ee4f42817877da2a3193e62c3fcda3f00
onnx/model_q4.onnx	122 MB	6649b0c098a3064fe9ef0da4e28a95f54d9c23421f825364d82aecd03549d00a
onnx/model_q4f16.onnx	71.9 MB	37d9e32421695970e478f92f24a9fda3ff05276c3ad3ca2d50c959d618a61223
onnx/model_quantized.onnx	67.0 MB	7f7fbaf4db27c9283fc32a26ad79028ee4f42817877da2a3193e62c3fcda3f00
onnx/model_uint8.onnx	67.0 MB	db474f6b0ee499270ed35ba76c2c5f39d7a23d5df43658219a613c58fbb6b58a
quantize_config.json	310 B	9b60b5877b9a1687b5cddbc06124a974cb7536af9dbf5295279bf73c3823170c
special_tokens_map.json	695 B	5d5b662e421ea9fac075174bb0688ee0d9431699900b90662acd44b2a350503a
tokenizer.json	711 KB	435667fab0c06c165b1283ecb422497c37124f2d6a35b2ac73dc876332fc9518
tokenizer_config.json	1.35 KB	57fe2986530bf3cabd211c1ad4935f0a272835b409a2767ac70e249f5343670d
vocab.txt	232 KB	07eced375cec144d27c900241f3e339478dec958f92fddbc551f295c992038a3

VersionsEach time the pinned upstream commit or file list changed in this repo. Newest first.

Upstream commit	Date	Contents
6ceb893e77 pinned now	2026-11-15 05:24 UTC	16 files · 915 MB

Use it

$ fw get onnx-community/biomedical-ner-all-ONNX
# manifest sha256 014bebd2e87e… · 915 MB · 16 files
$ fw verify ./biomedical-ner-all-ONNX onnx-community/biomedical-ner-all-ONNX

fw.pyChecks the signature and every sha256, tries each source in order, resumes.

$ python3 fw.py get https://freeweights.allternit.com/manifests/onnx-community/biomedical-ner-all-ONNX.json --dir ./biomedical-ner-all-ONNX
$ python3 fw.py verify ./biomedical-ner-all-ONNX ./onnx-community__biomedical-ner-all-ONNX.json

hfThe Hugging Face CLI with one setting. Same repo id.

$ HF_ENDPOINT=https://freeweights.allternit.com hf download onnx-community/biomedical-ner-all-ONNX --revision 6ceb893e772562380b0072dec34ef748e8faadd0 --local-dir ./biomedical-ner-all-ONNX

Run at home

License

Name: Apache License 2.0
Id: Apache-2.0
Class: Permissive
Redistribution: yes
Listing: Hosted (signed)
Decided: License as declared by the publisher. No person read it. 2026-11-15
Text in: README.md
Text sha256: 5c37c9d7bba98d014c8ccccd3aa4bfd4f287ccd4e8ef8d51a22049f7147ea82e
Terms gate: No extra terms beyond the license.

Read the license text

Licenses are checked against the license table. A custom license passes only after a person reads it.

Provenance

From:

onnx-community <huggingface.co/onnx-community>Newsgroups: alt.freeweights.visionSubject: biomedical-ner-all-ONNXDate: 2026-11-15Commit: 6ceb893Signed: 2DC28CC7B26A283B ✓

Upstream: onnx-community/biomedical-ner-all-ONNX
Pinned commit: 6ceb893e772562380b0072dec34ef748e8faadd0
Manifest: biomedical-ner-all-ONNX.json · .minisig
Manifest sha256: 014bebd2e87e949dc13fa390e2b321befd747b8baa6845e2e9d7ca29bee563a0
Signature: minisign, Ed25519, key 2DC28CC7B26A283B
Created: 2026-11-15 05:24 UTC
Generator: freeweights-manifest/0.1.0
Takedowns: None.

How to verify

$ curl -O https://freeweights.allternit.com/manifests/onnx-community/biomedical-ner-all-ONNX.json
$ curl -O https://freeweights.allternit.com/manifests/onnx-community/biomedical-ner-all-ONNX.json.minisig
$ minisign -Vm biomedical-ner-all-ONNX.json -P RWQ7KGqyx4zCLXtUFOqvfv8L3g+8fpKJ1FsuxPyOYMF+4KufbUxKq1Oq
$ shasum -a 256 <file>   # compare with the Files tab

A manifest whose signature fails must be rejected. A file whose size or sha256 does not match must be discarded. Verify a download

Model tree

Parent

d4data/biomedical-ner-all · this model is a quantization of it

No model in the catalog names this one as its parent.

Get it

Download

$ HF_ENDPOINT=https://freeweights.allternit.com hf download onnx-community/biomedical-ner-all-ONNX

Open in Freeweights Studio

Pull, verify and run it in the Allternit app on Desktop, web or phone.

Signed manifest

minisign, key 2DC28CC7B26A283B. biomedical-ner-all-ONNX.json. Provenance. Takedown history: none.

Source

huggingface.co/onnx-community/biomedical-ner-all-ONNX

Related models

All of alt.freeweights.vision →

From: dima806 <huggingface.co/dima806>Subject: ai_vs_real_image_detection

From: legekka <huggingface.co/legekka>Subject: AI-Anime-Image-Detector-ViT

From:

onnx-community <huggingface.co/onnx-community>Subject: AI-Anime-Image-Detector-ViT-ONNX

From: AICodexLab <huggingface.co/AICodexLab>Subject: answerdotai-ModernBERT-base-ai-detector

From:

onnx-community <huggingface.co/onnx-community>Subject: answerdotai-ModernBERT-base-ai-detector-ONNX

From:

onnx-community <huggingface.co/onnx-community>Subject: bart-large-cnn-ONNX